7. BioCRNpyler Tutorials

The following Jupyter notebooks provide a set of tutorial introductions to BioCRNpyler functionality.

Note

The tutorials here should probably eventually become independent chapters in the User Guide.

• 7.1. Building Chemical Reaction Networks (CRNs) Directly with BioCRNpyler
• 7.2. Compiling Chemical Reaction Networks
• 7.3. DNA Assemblies, gene expression, transcription, and translation
• 7.4. Building Gene Regulatory Networks with BioCRNpyler
• 7.5. Parameters in BioCRNpyler
• 7.6. Global Mechanisms
• 7.7. Plotting Installation:
• 7.8. Developer Overview
• 7.9. DNA_construct Examples