biocrnpyler.core

Chemical reaction networks and BioCRNpyler base classes.

Modules

chemical_reaction_network
compartment
component
mechanism
mixture
parameter	#### Parameter Value Defaulting: Not all parameters need to have the required headings. The only two required columns are "param_val" and "param_name". BioCRNpyler uses a form of parameter name defaulting discussed below to find default parameters if no exact match is in the config file. This makes it easy to set default parameters for things like "ku" and "ktx" to quickly build models.
polymer	The classes OrderedPolymer and OrderedMonomer are datastructures used to represent Polymers and their associatd components.
propensities
reaction
species