biocrnpyler.utils.general

Functions

all_comb(input_list)
combine_dictionaries(dict1, dict2)	append lists that share the same key, and add new keys WARNING: this only works if the dictionaries have values that are lists
member_dictionary_search(member, dictionary)	searches through a dictionary for keys relevant to the given data member.
parameter_to_value(p)
process_initial_concentration_dict(...)
recursive_parent(s)
remove_bindloc(spec_list)	go through every species on a list and remove any "bindloc" attributes.
rev_dir(dir)

biocrnpyler.utils.general.combine_dictionaries(dict1, dict2)

append lists that share the same key, and add new keys WARNING: this only works if the dictionaries have values that are lists

biocrnpyler.utils.general.member_dictionary_search(member, dictionary)

searches through a dictionary for keys relevant to the given data member. Order of returning: repr name material_type propensity name propensity partid propensity mechanism

biocrnpyler.utils.general.remove_bindloc(spec_list)

go through every species on a list and remove any “bindloc” attributes. This is used to convert monomers with a parent polymer into the correct species after combinatorial binding in things like DNAassembly and RNAassembly.